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http://www.pnas.org/content/98/18/10244/F1.large.jpg



http://www.scs.uiuc.edu/~mcdonald/WorldHaplogroupsMaps.pdf

Haplogroup frequencies across Central Asia
From Zerjal et al, 2002.

Genetic distances based on micosatellite haplotypes
From Zerjal et al, 2002.

Distribution of Y chromosome haplotype lineages in Uzbeks and Karakalpaks
From Spencer Wells et al, 2001.

Comparison of Karakalpak haplotype lineage frequencies to other ethnic groups in Central Asia

Population	Sample Size	YAP	M130	M89	M9	M45	M173	M17	Total
Karakalpaks	44	-	22	18	25	7	9	18	99
Uzbeks Average	366	4	12	27	14	8	11	24	100
Uzbeks Range	366	0 - 7	7-18	19-34	5-21	4-11	6-21	13-30	100
Uzbeks Khorezm	70	7	10	19	13	10	9	30	98
Uzbeks Bukhara	58	2	9	34	19	4	7	28	103
Uzbeks Samarkand	45	2	18	31	15	9	11	13	99
Uzbeks Kashkadarya	19	-	16	33	5	11	21	16	102
Uzbeks Surkhandarya	68	6	12	19	21	5	6	29	98
Uzbeks Tashkent	43	5	7	30	12	7	12	28	101
Uzbeks Ferghana	63	6	13	22	16	10	13	22	102
Turkmen Ashgabat	30	0	-	30	13	13	37	7	100
Kazakhs	54	2	66	2	13	8	6	4	101
Uighurs	41	-	15	34	21	7	0	22	99
Kyrgyz	52	-	14	6	12	2	2	63	99
Tajiks Samarkand	40	10	8	23	18	8	10	25	102
Tatars Crimea	22	5	9	37	10	0	9	32	102
Tatars Kazan	38	3	0	42	24	5	3	24	101
Iranians Tehran	24	21	0	67	4	0	4	4	100
Siberians Tuva	42	0	17	0	49	17	2	14	99
Mongolian	24	4	59	6	25	0	0	4	98

Mixture of western and eastern mtDNA haplogroups across Central Asia

Population	West Eurasian	East Asian	Indian	Total
Crimean Tatars	100	0	0	100
Iranians	85	15	0	100
Turkmen	55	45	0	100
Karakalpaks	50	50	0	100
Khorezmian Uzbeks	54	28	17	100
Bukharan Arabs	70	30	0	100
Uzbeks	45	44	9	100
Tajiks	55	45	0	100
Kazakhs	45	44	9	100
Kyrgyz	17	74	9	100
Dungans	31	69	0	100
Uighurs	6	94	0	100

Y Chromosome Diversity across Central Asia

Population	Region	Sample Size	Diversity
Karakalpak Qon'ırat	Karakalpakstan	54	0.97
Karakalpak On To'rt Urıw	Karakalpakstan	54	0.89
Uzbek Khorezm	Karakalpakstan	54	0.97
Kazakh Khorezm	Karakalpakstan	49	0.84
Turkmen Khorezm	Karakalpakstan	51	0.84
Uzbek Kashkadarya	Uzbekistan	28	1.00
Uighur Almaty	Kazakhstan	33	0.98
Kazakh Almaty	Kazakhstan	14	0.86
Turkmen Ashgabat	Turkmenistan	21	0.94
Tajik Pendjikent	Tajikistan	22	0.87
Tajik Kamangaron	Ferghana Valley	30	0.98
Tajik Richtan	Ferghana Valley	29	0.98
Kyrgyz Central	Kyrgyzstan	37	0.91
Kyrgyz Andijan	Uzbek Ferghana Valley	46	0.82
Kyrgyz Jankatalab	Uzbek Ferghana Valley	20	0.78
Kyrgyz Doboloo	Uzbek Ferghana Valley	22	0.70

Neighbour-joining tree of 61 Eurasian Populations
Karakalpaks are included in cluster VIII along with Uzbeks, Tatars and Uighurs
From Spencer Wells et al, 2001.

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